Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015888458.1_cds_XP_016443054.1_38253
CDS Infomation

[gene=LOC107768438] [db_xref=GeneID:107768438] [protein=serine hydroxymethyltransferase, mitochondrial-like] [protein_id=XP_016443054.1] [location=join(84434..84646,84760..84810,84900..84986,85693..85814,85936..86012,86106..86230,90947..91039,91547..91639,91745..91942,92095..92199,92786..92851,92997..93074,93321..93432,93516..93626,94055..94203)] [gbkey=CDS]
Sequence

ATGAGTAAGCTGGCGCCACAACGACCAGAATATTTATCCAAAATTCTCTCACCACCCAAA
CAAAAACATTCACAACTTTTTGAGTGTGCGTGTGTGCGCGCGCGCAGAAGGAGGACAGCT
GCAATGGCAATGGCAGTAGCTCTTCGGAGGCTTTCATCTACAGTTGACAAACCCATTAAG
CGTCTCTACAATGGTGGCTCTCTCTATTACATGTCATCTTTGCCAAATGAAGCTGTCTAC
GACAAGGAAAAATCTGGAGTCACCTGGCCAAAGCAACTGAATGCCCCGCTGGAGGTTGTT
GATCCTGAGATTGCTGACATAATTGAGCTTGAGAAAGCTCGCCAATGGAAGGGGCTCGAA
CTCATTCCTTCAGAAAATTTCACTTCCCTTTCGGTGATGCAAGCAGTTGGATCAGTTATG
ACTAACAAGTATAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTATATA
GACATGGCAGAAACTTTATGCCAGAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGTA
AAGTGGGGAGTGAATGTGCAGCCTCTATCAGGATCACCTGCTAATTTTCATGTTTACACT
GCATTATTAAAACCTCATGAACGGATCATGGCTCTTGATCTTCCTCATGGTGGACATCTT
TCTCATGGATATCAGACTGATACGAAGAAGATATCCGCAGTCTCTATATTCTTTGAGACA
ATGCCATACAGACTCAATGAGAGCACTGGCTATATTGACTATGACCAGCTTGAGAAAAGT
GCCACACTCTTTAGGCCAAAATTAATTGTTGCTGGTGCTAGTGCCTATGCACGTCTTTAC
GACTATGAACGAATCCGGAAGGTCTGCGACAAACAGAAAGCTATTTTATTAGCAGATATG
GCACACATTAGTGGATTGGTTGCAGCTGGAGTCATCCCATCACCATTTGATTATGCTGAT
GTTGTCACTACCACAACCCACAAATCCCTTCGTGGGCCTCGTGGTGCTATGATTTTCTTC
AGAAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTTTGTACGACTATGAAGAC
AAAATCAATCAGGCAGTCTTTCCTGGACTTCAAGGCGGTCCTCACAATCACACCATTACT
GGCTTGGCAGTTGCCTTGAAACAGGCAATCACTCCAGAATACAAAGCATACCAAGAGCAG
GTCCTCAGCAACTGCTCAAAATTTGCCCAGGCTTTAATGGAGAATGGTTATGAACTTGTC
TCTGGAGGAACGGAGAATCACTTGGTTTTGGTGAACCTGAAAAACAAGGGTATTGATGGT
TCTAGGGTTGAGAAAATCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACTGTTCCT
GGAGATGTATCTGCCATGGTCCCCGGTGGCATCAGGATGGGAACTCCTGCACTCACTTCT
CGGGGATTTGTTGAGGAAGATTTTGTGAAAGTTGCTGAATTCTTTGATGCTGCCGTGAAG
CTAGCAGTGAAAGTAAAGGCTGAAACTCAAGGGACAAAGTTGAAAGACTTTGTAGCAACG
CTACAATCCAGTGCTCCAATCAAGTCTGAAATTGCAAAGCTCCGCCATGATGTAGAGGAG
TATGCTAAGCAGTTCCCTACAATTGGGTTTGAAAAAGAAACAATGAAGTACAAAAACTAA

Peptide Sequence

PEP ID

XP_016443054.1
PEP Infomation

PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana tabacum]
Sequence

MSKLAPQRPEYLSKILSPPKQKHSQLFECACVRARRRRTAAMAMAVALRRLSSTVDKPIK
RLYNGGSLYYMSSLPNEAVYDKEKSGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLE
LIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPV
KWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFET
MPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCDKQKAILLADM
AHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKEVLYDYED
KINQAVFPGLQGGPHNHTITGLAVALKQAITPEYKAYQEQVLSNCSKFAQALMENGYELV
SGGTENHLVLVNLKNKGIDGSRVEKILEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS
RGFVEEDFVKVAEFFDAAVKLAVKVKAETQGTKLKDFVATLQSSAPIKSEIAKLRHDVEE
YAKQFPTIGFEKETMKYKN

Transcript Sequence

Gene sequence data has not been registered.